PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006961m
Common NameCICLE_v10006961mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 233aa    MW: 25907.8 Da    PI: 9.3841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006961mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-056688123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Ciclev10006961m 66 YTCSFCKREFRSAQALGGHMNVH 88
                     9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-66392No hitNo description
PfamPF139121.5E-66689IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.246693IPR007087Zinc finger, C2H2
SMARTSM003550.00386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERNIMSNSL KDHKIGSRFT RDSISNCNGY NNQNSGNKMK DSCQQRQQQS YGEEYLSGFS  60
WPPRSYTCSF CKREFRSAQA LGGHMNVHRR DRARLRISPP TPKDIIVNNN INNGQYPLLN  120
LNLNPNPNPN PNPNFSTPPL VSPFSSFSSQ SSASSSEIKK WSALTGALSP KDSVKKNEKS  180
FSGAKEFGGF TEEDDGFKLS KKGGEIVRLD LEIGVISDSK EDLDLELRLG YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-156188229superman protein
2l1o_A9e-156188229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754487e-34HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755217e-34HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420140.11e-171hypothetical protein CICLE_v10006961mg
TrEMBLV4S3L81e-171V4S3L8_9R
STRINGVIT_05s0049g00080.t018e-49(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-27C2H2 family protein